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Nitrosyl complex of the D121A variant of cytochrome c prime from Alcaligenes xylosoxidans
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 AMMONIUM SULFATE, HEPES PH 7.5
Crystal Properties Matthews coefficient Solvent content 2.76 55.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.756 α = 90 b = 53.756 β = 90 c = 180.023 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M MIRRORS 2013-03-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 9.3 97.5 0.08 12.1 5.7 27816
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.5 97.1 0.73 2.5 6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 1.45 46.55 26396 1399 97.67 0.1613 0.15919 0.1695 0.20074 0.2086 RANDOM 25.419
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.61 -0.31 -0.61 1.99
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 32.747 r_dihedral_angle_2_deg 32.435 r_sphericity_bonded 16.342 r_dihedral_angle_4_deg 15.37 r_dihedral_angle_3_deg 14.209 r_rigid_bond_restr 5.515 r_scbond_it 5.055 r_dihedral_angle_1_deg 4.962 r_mcangle_it 3.855 r_mcbond_it 3.445
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 32.747 r_dihedral_angle_2_deg 32.435 r_sphericity_bonded 16.342 r_dihedral_angle_4_deg 15.37 r_dihedral_angle_3_deg 14.209 r_rigid_bond_restr 5.515 r_scbond_it 5.055 r_dihedral_angle_1_deg 4.962 r_mcangle_it 3.855 r_mcbond_it 3.445 r_mcbond_other 3.411 r_angle_refined_deg 2.259 r_angle_other_deg 1.844 r_chiral_restr 0.118 r_bond_refined_d 0.018 r_gen_planes_refined 0.009 r_gen_planes_other 0.009 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 937 Nucleic Acid Atoms Solvent Atoms 147 Heterogen Atoms 45
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling