☰ Navigation Tabs
CRYSTAL STRUCTURE OF LECA IN COMPLEX WITH A DIVALENT GALACTOSIDE AT 1. 57 ANGSTROM IN MAGNESIUM
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OKO PDB ENTRY 1OKO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 SOLUTION 15 OF THE CSSI SCREEN 10 % PEG 8K, 10% PEG 1K, 100 MM TRIS 8.5 AND 200 MM MGCL2
Crystal Properties Matthews coefficient Solvent content 2.6 52.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.666 α = 90 b = 65.393 β = 90 c = 159.869 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2013-02-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.57 39.97 99.9 0.07 19.2 7.6 75110 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.57 1.6 99.4 0.38 2.9 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1OKO 1.57 39.97 71247 3777 99.85 0.16471 0.16331 0.1758 0.19138 0.2019 RANDOM 35.32
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.97 2.72 -1.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.155 r_dihedral_angle_3_deg 11.919 r_dihedral_angle_4_deg 6.78 r_dihedral_angle_1_deg 5.9 r_scbond_it 2.219 r_mcangle_it 1.89 r_angle_refined_deg 1.763 r_mcbond_it 1.339 r_mcbond_other 1.337 r_angle_other_deg 0.795
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.155 r_dihedral_angle_3_deg 11.919 r_dihedral_angle_4_deg 6.78 r_dihedral_angle_1_deg 5.9 r_scbond_it 2.219 r_mcangle_it 1.89 r_angle_refined_deg 1.763 r_mcbond_it 1.339 r_mcbond_other 1.337 r_angle_other_deg 0.795 r_nbd_refined 0.243 r_symmetry_vdw_refined 0.24 r_symmetry_vdw_other 0.214 r_nbtor_refined 0.178 r_nbd_other 0.177 r_metal_ion_refined 0.115 r_chiral_restr 0.105 r_xyhbond_nbd_refined 0.104 r_nbtor_other 0.081 r_symmetry_hbond_refined 0.039 r_bond_refined_d 0.015 r_gen_planes_refined 0.009 r_xyhbond_nbd_other 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3619 Nucleic Acid Atoms Solvent Atoms 362 Heterogen Atoms 142
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing