4CKN

Structure of an N-terminal fragment of Leishmania SAS-6 containing parts of its coiled coil domain, F257E mutant


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
15.85100 MM NACITRATE PH 5.85, 21% (W/V) PEG-3000
Crystal Properties
Matthews coefficientSolvent content
2.8957.52

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 108.855α = 90
b = 81.253β = 91.5
c = 133.149γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2013-05-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID29ESRFID29

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.946.9199.90.1510.67.2259040.9
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.93.0899.90.97.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 4CKM2.9133.124090127997.770.237750.236730.25597RANDOM92.751
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-3.22-4.49-1.044.49
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.504
r_dihedral_angle_4_deg16.215
r_dihedral_angle_3_deg15.634
r_scangle_it7.562
r_mcangle_it7.418
r_dihedral_angle_1_deg5.652
r_scbond_it4.565
r_mcbond_it4.477
r_mcbond_other4.474
r_angle_refined_deg1.255
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.504
r_dihedral_angle_4_deg16.215
r_dihedral_angle_3_deg15.634
r_scangle_it7.562
r_mcangle_it7.418
r_dihedral_angle_1_deg5.652
r_scbond_it4.565
r_mcbond_it4.477
r_mcbond_other4.474
r_angle_refined_deg1.255
r_angle_other_deg1.172
r_symmetry_hbond_refined0.429
r_symmetry_vdw_other0.262
r_nbd_refined0.235
r_nbd_other0.184
r_nbtor_refined0.184
r_symmetry_vdw_refined0.184
r_xyhbond_nbd_refined0.132
r_xyhbond_nbd_other0.11
r_nbtor_other0.088
r_chiral_restr0.064
r_bond_refined_d0.008
r_bond_other_d0.005
r_gen_planes_refined0.005
r_gen_planes_other0.004
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5653
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing