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Open-form NavMS Sodium Channel Pore (with C-terminal Domain) after thallium soak
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4BHA PDB ENTRY 4BHA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 0.1 M NA3CITRATE, 0.1 M TRIS, PH 8.0, 34% PEG400
Crystal Properties Matthews coefficient Solvent content 7.5 83.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.901 α = 90 b = 331.704 β = 90 c = 79.933 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M MIRRORS 2012-11-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.67 45.47 99.5 0.3 11.7 19.7 30860 28.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.67 2.79 96.2 0.8 2.7 7.8
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 4BHA 2.664 45.469 1.34 30784 1576 99.39 0.2772 0.276 0.2804 0.2994 0.3013 55.17
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 13.159 f_angle_d 0.933 f_chiral_restr 0.063 f_bond_d 0.005 f_plane_restr 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2912 Nucleic Acid Atoms Solvent Atoms 88 Heterogen Atoms 125
Software Software Software Name Purpose PHENIX refinement XDS data reduction Aimless data scaling PHASER phasing