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Crystal Structure of the synthetic peptide iM10 in complex with the coiled-coil region of MITF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 3.5 M NAFORMATE PH 7.0
Crystal Properties Matthews coefficient Solvent content 2 38.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 23.701 α = 90 b = 33.265 β = 94.65 c = 61.125 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-05-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 60.92 99.8 0.1 15.6 12.6 7041 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.18 99.7 0.37 6.6 13.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 2.1 60.92 5428 266 99.89 0.22872 0.22755 0.2359 0.25312 0.2533 RANDOM 38.94
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.82 -0.68 -1.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.762 r_dihedral_angle_3_deg 21.166 r_dihedral_angle_4_deg 17.382 r_dihedral_angle_1_deg 2.934 r_scbond_it 1.855 r_mcangle_it 1.809 r_mcbond_it 1.214 r_mcbond_other 1.195 r_angle_refined_deg 1.175 r_angle_other_deg 0.734
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.762 r_dihedral_angle_3_deg 21.166 r_dihedral_angle_4_deg 17.382 r_dihedral_angle_1_deg 2.934 r_scbond_it 1.855 r_mcangle_it 1.809 r_mcbond_it 1.214 r_mcbond_other 1.195 r_angle_refined_deg 1.175 r_angle_other_deg 0.734 r_chiral_restr 0.064 r_bond_refined_d 0.01 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 833 Nucleic Acid Atoms Solvent Atoms 49 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling autoSHARP phasing