X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
15.6THE RESERVOIR CONTAINED 0.9 M LITHIUM SULPHATE IN 100 MM BIS-TRIS PROPANE BUFFER (PH 5.6). THE PROTEIN CONCENTRATION USED WAS 3 MG ML-1.
Crystal Properties
Matthews coefficientSolvent content
2.856

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 170.538α = 90
b = 170.538β = 90
c = 101.762γ = 120
Symmetry
Space GroupP 32

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray120CCDADSC QUANTUM 3152012-07-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I03DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.659.7897.80.154.64.81023012
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.62.6599.40.562.14.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 4A9W2.6147.6994032502097.180.2570.254970.29496RANDOM52.483
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.390.20.39-1.28
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.846
r_dihedral_angle_4_deg20.659
r_dihedral_angle_3_deg17.701
r_mcangle_it7.249
r_dihedral_angle_1_deg6.462
r_mcbond_it4.807
r_mcbond_other4.807
r_scbond_it4.479
r_angle_refined_deg1.656
r_angle_other_deg1.203
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.846
r_dihedral_angle_4_deg20.659
r_dihedral_angle_3_deg17.701
r_mcangle_it7.249
r_dihedral_angle_1_deg6.462
r_mcbond_it4.807
r_mcbond_other4.807
r_scbond_it4.479
r_angle_refined_deg1.656
r_angle_other_deg1.203
r_chiral_restr0.081
r_bond_refined_d0.013
r_gen_planes_refined0.009
r_bond_other_d0.008
r_gen_planes_other0.008
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_it
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms19442
Nucleic Acid Atoms
Solvent Atoms106
Heterogen Atoms589

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
SCALAdata scaling
MOLREPphasing