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Flavin monooxygenase from Stenotrophomonas maltophilia. Q193R H194T mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4A9W PDB ENTRY 4A9W
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.6 THE RESERVOIR CONTAINED 0.9 M LITHIUM SULPHATE IN 100 MM BIS-TRIS PROPANE BUFFER (PH 5.6). THE PROTEIN CONCENTRATION USED WAS 3 MG ML-1.
Crystal Properties Matthews coefficient Solvent content 2.8 56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 170.538 α = 90 b = 170.538 β = 90 c = 101.762 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 CCD ADSC QUANTUM 315 2012-07-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 59.78 97.8 0.15 4.6 4.8 102301 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.65 99.4 0.56 2.1 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4A9W 2.6 147.69 94032 5020 97.18 0.257 0.25497 0.2578 0.29496 0.2947 RANDOM 52.483
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.39 0.2 0.39 -1.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.846 r_dihedral_angle_4_deg 20.659 r_dihedral_angle_3_deg 17.701 r_mcangle_it 7.249 r_dihedral_angle_1_deg 6.462 r_mcbond_it 4.807 r_mcbond_other 4.807 r_scbond_it 4.479 r_angle_refined_deg 1.656 r_angle_other_deg 1.203
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.846 r_dihedral_angle_4_deg 20.659 r_dihedral_angle_3_deg 17.701 r_mcangle_it 7.249 r_dihedral_angle_1_deg 6.462 r_mcbond_it 4.807 r_mcbond_other 4.807 r_scbond_it 4.479 r_angle_refined_deg 1.656 r_angle_other_deg 1.203 r_chiral_restr 0.081 r_bond_refined_d 0.013 r_gen_planes_refined 0.009 r_bond_other_d 0.008 r_gen_planes_other 0.008 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 19442 Nucleic Acid Atoms Solvent Atoms 106 Heterogen Atoms 589
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling MOLREP phasing