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MOUSE CATHEPSIN S WITH COVALENT LIGAND
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other IN HOUSE STRUCTURES
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 25% PEG 3350, 0.1 M HEPES PH7.5, 0.2M MGCL2
Crystal Properties Matthews coefficient Solvent content 2.23 44.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.27 α = 90 b = 66.74 β = 90.36 c = 97.96 γ = 90
Symmetry Space Group P 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2008-09-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 19.1 82.9 0.04 14.07 2.74 143497 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.2 36.8 0.42 1.53 0.73
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT IN HOUSE STRUCTURES 1.2 19.15 119007 6353 93.8 0.12359 0.12193 0.15497 0.1563 RANDOM 16.825
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.44 -0.32 -0.29 -0.15
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 37.373 r_dihedral_angle_2_deg 33.999 r_dihedral_angle_4_deg 13.599 r_sphericity_bonded 12.093 r_dihedral_angle_3_deg 10.701 r_dihedral_angle_1_deg 5.493 r_rigid_bond_restr 1.468 r_angle_refined_deg 1.379 r_angle_other_deg 0.924 r_chiral_restr 0.107
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 37.373 r_dihedral_angle_2_deg 33.999 r_dihedral_angle_4_deg 13.599 r_sphericity_bonded 12.093 r_dihedral_angle_3_deg 10.701 r_dihedral_angle_1_deg 5.493 r_rigid_bond_restr 1.468 r_angle_refined_deg 1.379 r_angle_other_deg 0.924 r_chiral_restr 0.107 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3352 Nucleic Acid Atoms Solvent Atoms 702 Heterogen Atoms 86
Software Software Software Name Purpose REFMAC refinement XDS data reduction SADABS data scaling PHASER phasing