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Legionella pneumophila NTPDase1 Q193E crystal form II, closed, Mg AMPPNP complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.6 100MM NAMES PH 5.6, 12% PEG3350, 200MM MGCL2
Crystal Properties Matthews coefficient Solvent content 2.2 44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.134 α = 90 b = 86.045 β = 106.78 c = 71.977 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 29 99.4 0.04 17 4.5 115389 -3 15.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 1.5 29.2 113023 2307 99.4 0.14143 0.14028 0.19685 0.1774 RANDOM 21.967
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.8 0.48 -0.95 1.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.279 r_sphericity_free 31.216 r_sphericity_bonded 20.855 r_dihedral_angle_4_deg 18.482 r_dihedral_angle_3_deg 13.859 r_dihedral_angle_1_deg 5.97 r_rigid_bond_restr 5.353 r_angle_refined_deg 1.949 r_chiral_restr 0.126 r_bond_refined_d 0.019
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.279 r_sphericity_free 31.216 r_sphericity_bonded 20.855 r_dihedral_angle_4_deg 18.482 r_dihedral_angle_3_deg 13.859 r_dihedral_angle_1_deg 5.97 r_rigid_bond_restr 5.353 r_angle_refined_deg 1.949 r_chiral_restr 0.126 r_bond_refined_d 0.019 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5726 Nucleic Acid Atoms Solvent Atoms 552 Heterogen Atoms 93
Software Software Software Name Purpose REFMAC refinement