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Oligopeptidase B from Trypanosoma brucei - open form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 9 9% (W/V) POLYETHYLENE GLYCOL 6000, 1M LITHIUM CHLORIDE, 100MM BIS-TRIS PROPANE, PH 7.5
Crystal Properties Matthews coefficient Solvent content 2.88 57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 124.14 α = 90 b = 124.14 β = 90 c = 249.14 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS 2008-11-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 66 99.3 0.17 18.6 34.6 86984 -3 53.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.53 95.6 1.5 2 22.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 2.4 65.73 83463 3521 99.31 0.18625 0.18402 0.193 0.23885 0.2439 RANDOM 46.311
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.95 0.98 1.95 -2.93
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.226 r_dihedral_angle_4_deg 19.688 r_dihedral_angle_3_deg 18.324 r_dihedral_angle_1_deg 7.639 r_scangle_it 3.754 r_scbond_it 2.322 r_angle_refined_deg 1.721 r_mcangle_it 1.325 r_mcbond_it 0.677 r_chiral_restr 0.132
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.226 r_dihedral_angle_4_deg 19.688 r_dihedral_angle_3_deg 18.324 r_dihedral_angle_1_deg 7.639 r_scangle_it 3.754 r_scbond_it 2.322 r_angle_refined_deg 1.721 r_mcangle_it 1.325 r_mcbond_it 0.677 r_chiral_restr 0.132 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11302 Nucleic Acid Atoms Solvent Atoms 778 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SOLVE phasing RESOLVE phasing REFMAC refinement