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Structure of an atypical alpha-phosphoglucomutase similar to eukaryotic phosphomannomutases
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 SEEDING, 2.0 M AMMONIUM SULFATE, 0.1 M HEPES PH 7.5, 2% PEG 400
Crystal Properties Matthews coefficient Solvent content 2.3 46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.174 α = 90 b = 67.174 β = 90 c = 210.394 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2008-07-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 33 100 0.08 16.8 8.3 89350 3 15
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.58 100 0.71 3.1 8.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.5 30.05 3 89249 4470 99.95 0.157 0.1558 0.18 0.1845 RANDOM 19.501
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.3 0.3 0.3 -0.975
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.126 r_dihedral_angle_3_deg 12.838 r_dihedral_angle_4_deg 12.196 r_scangle_it 8.876 r_dihedral_angle_1_deg 6.508 r_scbond_it 2.676 r_angle_refined_deg 1.759 r_mcangle_it 1.434 r_mcbond_it 0.934 r_angle_other_deg 0.873
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.126 r_dihedral_angle_3_deg 12.838 r_dihedral_angle_4_deg 12.196 r_scangle_it 8.876 r_dihedral_angle_1_deg 6.508 r_scbond_it 2.676 r_angle_refined_deg 1.759 r_mcangle_it 1.434 r_mcbond_it 0.934 r_angle_other_deg 0.873 r_nbd_refined 0.264 r_mcbond_other 0.227 r_nbtor_refined 0.184 r_nbd_other 0.182 r_chiral_restr 0.11 r_xyhbond_nbd_refined 0.109 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3985 Nucleic Acid Atoms Solvent Atoms 602 Heterogen Atoms 46
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling HKL2Map phasing PHASER phasing REFMAC refinement