4BAU

Structure of a putative epoxide hydrolase t131d mutant from Pseudomonas aeruginosa, with bound MFA


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
18.50.1 M LI2SO4, 1.25M (NH4)2SO4, 0.1 M TRIS HCL PH 8.5
Crystal Properties
Matthews coefficientSolvent content
3.6766.5

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 83.86α = 90
b = 83.86β = 90
c = 140.57γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2012-03-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONMAX II BEAMLINE I911-3MAX III911-3

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.5517.797.50.110.74.971161215.6
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.551.6395.80.811.94.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUTPDB ENTRY 4B9A1.5517.5767543359097.010.139080.137350.17094RANDOM14.469
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.010.01-0.03
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.584
r_sphericity_free31.03
r_dihedral_angle_4_deg18.241
r_dihedral_angle_3_deg11.077
r_sphericity_bonded10.884
r_dihedral_angle_1_deg5.312
r_rigid_bond_restr4.87
r_angle_refined_deg1.761
r_angle_other_deg1.13
r_symmetry_vdw_refined0.304
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.584
r_sphericity_free31.03
r_dihedral_angle_4_deg18.241
r_dihedral_angle_3_deg11.077
r_sphericity_bonded10.884
r_dihedral_angle_1_deg5.312
r_rigid_bond_restr4.87
r_angle_refined_deg1.761
r_angle_other_deg1.13
r_symmetry_vdw_refined0.304
r_nbd_refined0.27
r_nbd_other0.237
r_nbtor_refined0.183
r_symmetry_vdw_other0.17
r_xyhbond_nbd_refined0.163
r_xyhbond_nbd_other0.134
r_chiral_restr0.12
r_nbtor_other0.11
r_symmetry_hbond_refined0.039
r_bond_refined_d0.017
r_gen_planes_refined0.011
r_bond_other_d0.002
r_gen_planes_other0.002
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_it
r_mcbond_other
r_mcangle_it
r_mcangle_other
r_scbond_it
r_scbond_other
r_scangle_it
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2329
Nucleic Acid Atoms
Solvent Atoms373
Heterogen Atoms81

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
REFMACphasing