☰ Navigation Tabs
Crystal structure of hypothetical protein PA1648 from Pseudomonas aeruginosa.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2J3H PDB ENTRY 2J3H
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 0.9 M NA CITRATE, 0.1 M MES PH 6.5, 0.1 M MGSO4, 10 % GLYCEROL
Crystal Properties Matthews coefficient Solvent content 3.16 61.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 170.93 α = 90 b = 177.09 β = 90 c = 181.66 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2010-07-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.09 73.06 99.2 0.05 20.1 4.9 318966 2 39
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.09 2.15 99.1 0.66 2.4 4.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2J3H 2.1 73.064 316491 15989 99.095 0.224 0.2227 0.2242 0.2428 0.2419 RANDOM 41.087
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.838 -0.754 -0.084
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.933 r_dihedral_angle_4_deg 19.741 r_dihedral_angle_3_deg 14.589 r_scbond_it 6.397 r_scangle_it 5.47 r_dihedral_angle_1_deg 5.292 r_mcangle_it 3.652 r_mcbond_it 2.298 r_angle_other_deg 1.608 r_angle_refined_deg 1.362
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.933 r_dihedral_angle_4_deg 19.741 r_dihedral_angle_3_deg 14.589 r_scbond_it 6.397 r_scangle_it 5.47 r_dihedral_angle_1_deg 5.292 r_mcangle_it 3.652 r_mcbond_it 2.298 r_angle_other_deg 1.608 r_angle_refined_deg 1.362 r_mcbond_other 0.538 r_nbd_other 0.368 r_nbd_refined 0.215 r_nbtor_refined 0.178 r_xyhbond_nbd_refined 0.12 r_chiral_restr 0.087 r_xyhbond_nbd_other 0.07 r_bond_refined_d 0.009 r_bond_other_d 0.008 r_gen_planes_refined 0.006 r_gen_planes_other 0.006 r_nbtor_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 29081 Nucleic Acid Atoms Solvent Atoms 976 Heterogen Atoms 60
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing