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Structure of the Phactr1 RPEL-3 bound to G-actin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2V52 PDB ENTRY 2V52
Crystallization Crystal Properties Matthews coefficient Solvent content 1.74 28.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.58 α = 90 b = 63.56 β = 108.83 c = 62.57 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.29 30 99.7 0.05 5.5 3.1 98023 1.8 10.35
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.29 1.36 99.7 0.42 1.8 3.1
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 2V52 1.29 29.419 1.42 95813 4841 97.75 0.1515 0.1503 0.1534 0.1744 0.1751
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 19.286 f_angle_d 1.296 f_chiral_restr 0.086 f_bond_d 0.007 f_plane_restr 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3097 Nucleic Acid Atoms Solvent Atoms 556 Heterogen Atoms 121
Software Software Software Name Purpose PHENIX refinement PHASER phasing