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Crystal Structure of 3-hydroxydecanoyl-Acyl Carrier Protein Dehydratase (FabA) mutant (H70N) from Pseudomonas aeruginosa in complex with 3-hydroxydecanoyl-N-acetyl cysteamine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4FQ9 PDB ENTRY 4FQ9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.5 13% PEG MME 5000, 0.09 M LITHIUM SULPHATE, 0.1 M SODIUM CITRATE PH 4.5
Crystal Properties Matthews coefficient Solvent content 2.69 54.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.791 α = 90 b = 169.686 β = 90 c = 108.3 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2010-11-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.03 54.15 98 0.06 15.23 4.5 64767 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.03 2.15 99.5 0.46 2.68 4.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4FQ9 2.03 54.15 61487 3280 98 0.17378 0.17202 0.1819 0.20571 0.2153 RANDOM 42.398
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.17 1.92 -4.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.84 r_dihedral_angle_4_deg 16.979 r_dihedral_angle_3_deg 15.551 r_dihedral_angle_1_deg 8.499 r_scangle_it 5.47 r_scbond_it 3.662 r_mcangle_it 2.096 r_mcbond_it 1.37 r_angle_refined_deg 1.275 r_angle_other_deg 0.763
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.84 r_dihedral_angle_4_deg 16.979 r_dihedral_angle_3_deg 15.551 r_dihedral_angle_1_deg 8.499 r_scangle_it 5.47 r_scbond_it 3.662 r_mcangle_it 2.096 r_mcbond_it 1.37 r_angle_refined_deg 1.275 r_angle_other_deg 0.763 r_mcbond_other 0.546 r_chiral_restr 0.077 r_gen_planes_refined 0.014 r_bond_refined_d 0.011 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6490 Nucleic Acid Atoms Solvent Atoms 355 Heterogen Atoms 95
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing