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Liganded X-ray crystal structure of cyclin dependent kinase 6 (CDK6)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.7 287 5MG/ML 0.1 M MES/NAOH PH 5.7,, 4.5% W/V PEG 3350, 25 MM SODIUM NITRATE, 10% V/V GLYCEROL, 10 DEGREES CELSIUS
Crystal Properties Matthews coefficient Solvent content 2.18 43.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.734 α = 90 b = 100.734 β = 90 c = 60.3 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 71.23 98 0.04 17.4 3.6 13277 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.36 98.6 0.37 3.9 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.31 71.23 12395 680 97.9 0.21033 0.20668 0.2141 0.27734 0.2903 RANDOM 46.949
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.42 2.42 -4.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.838 r_dihedral_angle_3_deg 18.916 r_dihedral_angle_4_deg 17.102 r_dihedral_angle_1_deg 6.243 r_angle_refined_deg 1.354 r_angle_other_deg 0.948 r_symmetry_vdw_other 0.249 r_nbd_refined 0.211 r_nbd_other 0.201 r_nbtor_refined 0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.838 r_dihedral_angle_3_deg 18.916 r_dihedral_angle_4_deg 17.102 r_dihedral_angle_1_deg 6.243 r_angle_refined_deg 1.354 r_angle_other_deg 0.948 r_symmetry_vdw_other 0.249 r_nbd_refined 0.211 r_nbd_other 0.201 r_nbtor_refined 0.18 r_xyhbond_nbd_refined 0.152 r_symmetry_vdw_refined 0.13 r_nbtor_other 0.09 r_chiral_restr 0.079 r_scangle_it 0.063 r_symmetry_hbond_refined 0.059 r_mcangle_it 0.057 r_scbond_it 0.047 r_mcbond_it 0.037 r_xyhbond_nbd_other 0.025 r_mcbond_other 0.013 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2048 Nucleic Acid Atoms Solvent Atoms 86 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling