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TETR(B) IN COMPLEX WITH MINOCYCLINE AND MAGNESIUM
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2TCT PDB ENTRY 2TCT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.68 54.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.88 α = 90 b = 71.88 β = 90 c = 93.43 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2010-03-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X12 EMBL/DESY, HAMBURG X12
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.45 56.91 99.2 0.12 20.9 6.3 17118 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.45 2.6 97 0.91 2.34 6.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2TCT 2.45 56.97 8998 454 99.16 0.237 0.23443 0.2282 0.29376 0.2915 RANDOM 66.319
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.19 2.19 -4.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.082 r_dihedral_angle_4_deg 23.81 r_dihedral_angle_3_deg 19.76 r_dihedral_angle_1_deg 6.489 r_scangle_it 3.392 r_scbond_it 2.287 r_angle_refined_deg 1.793 r_mcangle_it 1.559 r_mcbond_it 0.839 r_chiral_restr 0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.082 r_dihedral_angle_4_deg 23.81 r_dihedral_angle_3_deg 19.76 r_dihedral_angle_1_deg 6.489 r_scangle_it 3.392 r_scbond_it 2.287 r_angle_refined_deg 1.793 r_mcangle_it 1.559 r_mcbond_it 0.839 r_chiral_restr 0.11 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1553 Nucleic Acid Atoms Solvent Atoms 24 Heterogen Atoms 44
Software Software Software Name Purpose REFMAC refinement XDS data reduction PHASER phasing