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CRYSTAL STRUCTURE OF BETAINE ALDEHYDE DEHYDROGENASE FROM SPINACH IN COMPLEX WITH NAD
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3FG0 PDB ENTRY 3FG0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 CRYSTALS WERE GROWN IN 0.085 M TRIS HYDROCHLORIDE PH 8.5, 0.17 M SODIUM ACETATE TRIHYDRATE, 25.5% W/V POLYETHYLENE GLYCOL 4,000, 15% V/V GLYCEROL.
Crystal Properties Matthews coefficient Solvent content 2.1 41.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.406 α = 79.06 b = 80.979 β = 84.94 c = 85.54 γ = 77.99
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD DOUBLE CRYSTAL CHANNEL CUT, SI(III) 1M LONG 2009-11-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X6A NSLS X6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 30 93.2 0.04 14.5 2.28 76619
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.43 81.1 0.38 2.56 2.22
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 3FG0 2.3 29.078 1.97 76619 3838 96.59 0.2343 0.2131 0.2283 0.2467 0.2501
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.8302 2.4863 -1.5381 -2.3988 -0.0967 0.6802
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 20.166 f_angle_d 1.448 f_chiral_restr 0.08 f_plane_restr 0.021 f_bond_d 0.014
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15212 Nucleic Acid Atoms Solvent Atoms 524 Heterogen Atoms 226
Software Software Software Name Purpose PHENIX refinement XDS data reduction SCALEPACK data scaling PHASER phasing