4A05

Structure of the catalytic core domain of the cellobiohydrolase, Cel6A, from Chaetomium thermophilum


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1720% PEG 6000, 0.1M HEPES PH 7.0, 0.14 M LICL
Crystal Properties
Matthews coefficientSolvent content
2.5551.7

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 49.71α = 90
b = 76.06β = 90
c = 107.24γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHMIRRORS2010-10-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04-1DiamondI04-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.95099.90.0914.67.132910217.2
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.9299.80.27.47.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1OC61.938.0331106164799.610.168750.167210.19722RANDOM21.107
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.13-0.030.16
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.962
r_dihedral_angle_4_deg16.959
r_dihedral_angle_3_deg12.31
r_sphericity_free7.516
r_sphericity_bonded6.019
r_dihedral_angle_1_deg5.766
r_rigid_bond_restr1.552
r_angle_refined_deg1.222
r_mcangle_it1.222
r_nbtor_refined0.312
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.962
r_dihedral_angle_4_deg16.959
r_dihedral_angle_3_deg12.31
r_sphericity_free7.516
r_sphericity_bonded6.019
r_dihedral_angle_1_deg5.766
r_rigid_bond_restr1.552
r_angle_refined_deg1.222
r_mcangle_it1.222
r_nbtor_refined0.312
r_nbd_refined0.199
r_symmetry_hbond_refined0.168
r_symmetry_vdw_refined0.159
r_xyhbond_nbd_refined0.129
r_chiral_restr0.077
r_metal_ion_refined0.011
r_bond_refined_d0.009
r_mcbond_it0.009
r_gen_planes_refined0.005
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_it
r_scbond_other
r_scangle_it
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2775
Nucleic Acid Atoms
Solvent Atoms325
Heterogen Atoms97

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
MOLREPphasing