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Crystal structure of the kinase domain of ROR2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2JIV PDB ENTRY 2JIV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 0.2M AMMONIUM ACETATE, 2.2M AMMONIUM SULFATE, pH 7.5
Crystal Properties Matthews coefficient Solvent content 1.97 40.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.613 α = 90 b = 61.301 β = 93.07 c = 79.936 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2011-02-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 3.06 99.8 0.17 4.4 5.7 12094 3 64.07
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 3.06 99.9 0.83 0.9 5.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2JIV 2.9 46.77 12075 578 99.7 0.1903 0.1874 0.1979 0.2473 0.2646 RANDOM 56.14
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 21.0494 -1.6921 -19.6934 -1.356
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 3.11 t_omega_torsion 2.63 t_angle_deg 1 t_bond_d 0.009 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 3.11 t_omega_torsion 2.63 t_angle_deg 1 t_bond_d 0.009 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it t_nbd t_improper_torsion t_chiral_improper_torsion t_sum_occupancies t_utility_distance t_utility_angle t_utility_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4250 Nucleic Acid Atoms Solvent Atoms 36 Heterogen Atoms 21
Software Software Software Name Purpose BUSTER refinement XDS data reduction SCALA data scaling Auto-Rickshaw phasing