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Identification of 2-(4-pyridyl)thienopyridinones as GSK-3beta inhibitors
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GNG PDB ENTRY 1GNG
Crystallization Crystal Properties Matthews coefficient Solvent content 2.56 51.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 153.08 α = 90 b = 153.08 β = 90 c = 200.873 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.49 40 100 0.1 24.2 7.4 31863
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.49 2.53 100 0.49 5.1 7.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT PDB ENTRY 1GNG 2.49 20 30492 1296 99.92 0.19028 0.18796 0.1876 0.24658 0.2448 RANDOM 41.067
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.32 -0.16 -0.32 0.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.648 r_dihedral_angle_4_deg 22.43 r_dihedral_angle_3_deg 16.847 r_dihedral_angle_1_deg 5.554 r_scangle_it 4.583 r_scbond_it 3.079 r_mcangle_it 2.22 r_angle_refined_deg 1.203 r_mcbond_it 1.111 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.648 r_dihedral_angle_4_deg 22.43 r_dihedral_angle_3_deg 16.847 r_dihedral_angle_1_deg 5.554 r_scangle_it 4.583 r_scbond_it 3.079 r_mcangle_it 2.22 r_angle_refined_deg 1.203 r_mcbond_it 1.111 r_nbtor_refined 0.307 r_symmetry_vdw_refined 0.224 r_nbd_refined 0.201 r_symmetry_hbond_refined 0.15 r_xyhbond_nbd_refined 0.13 r_chiral_restr 0.076 r_bond_refined_d 0.009 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5902 Nucleic Acid Atoms Solvent Atoms 183 Heterogen Atoms 88
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling