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Identification of 2-(4-pyridyl)thienopyridinones as GSK-3beta inhibitors
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GNG PDB ENTRY 1GNG
Crystallization Crystal Properties Matthews coefficient Solvent content 2.56 51.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 153.231 α = 90 b = 153.231 β = 90 c = 201.729 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.48 40 97.4 0.08 23.4 7.1 31542
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.48 2.52 99.2 0.43 4.92 6.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT PDB ENTRY 1GNG 2.48 20 30190 1286 97.33 0.18789 0.18532 0.1851 0.24916 0.2492 RANDOM 46.037
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.57 -0.29 -0.57 0.86
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.921 r_dihedral_angle_4_deg 22.344 r_dihedral_angle_3_deg 16.84 r_dihedral_angle_1_deg 5.71 r_scangle_it 4.966 r_scbond_it 3.603 r_mcangle_it 2.377 r_angle_refined_deg 1.289 r_mcbond_it 1.184 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.921 r_dihedral_angle_4_deg 22.344 r_dihedral_angle_3_deg 16.84 r_dihedral_angle_1_deg 5.71 r_scangle_it 4.966 r_scbond_it 3.603 r_mcangle_it 2.377 r_angle_refined_deg 1.289 r_mcbond_it 1.184 r_nbtor_refined 0.306 r_symmetry_vdw_refined 0.217 r_nbd_refined 0.201 r_symmetry_hbond_refined 0.167 r_xyhbond_nbd_refined 0.134 r_chiral_restr 0.083 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5905 Nucleic Acid Atoms Solvent Atoms 198 Heterogen Atoms 82
Software Software Software Name Purpose REFMAC refinement