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N-domain of ClpV from Vibrio cholerae
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 291 0.2M NAACETATE PH 7.0, 20% (W/V) PEG 3350, 18C
Crystal Properties Matthews coefficient Solvent content 2.35 47.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.898 α = 90 b = 72.99 β = 90 c = 73.033 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2009-09-05 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 36 99.5 0.05 24 7 18149 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.85 95.4 0.234 4.3 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 1.8 35.95 17241 908 100 0.193 0.191 0.1994 0.218 0.2288 RANDOM 23.866
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.06 -0.37 0.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.913 r_dihedral_angle_4_deg 22.336 r_dihedral_angle_3_deg 13.807 r_dihedral_angle_1_deg 5.414 r_scangle_it 5.314 r_scbond_it 3.403 r_mcangle_it 2.249 r_angle_refined_deg 1.879 r_mcbond_it 1.379 r_chiral_restr 0.142
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.913 r_dihedral_angle_4_deg 22.336 r_dihedral_angle_3_deg 13.807 r_dihedral_angle_1_deg 5.414 r_scangle_it 5.314 r_scbond_it 3.403 r_mcangle_it 2.249 r_angle_refined_deg 1.879 r_mcbond_it 1.379 r_chiral_restr 0.142 r_bond_refined_d 0.024 r_gen_planes_refined 0.012 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1325 Nucleic Acid Atoms Solvent Atoms 87 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement