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ISOPENICILLIN N SYNTHASE WITH AC-O-METHYL-D-THREONINE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BK0 PDB ENTRY 1BK0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 1.0M LITHIUM SULPHATE, 76MM TRIS/HCL, PH 8.5, 2.0MM FERROUS SULPHATE, 2.6MG/ML TRIPEPTIDE, 25MG/ML IPNS
Crystal Properties Matthews coefficient Solvent content 2.22 44.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.48 α = 90 b = 70.79 β = 90 c = 100.51 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1998-03-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.81 21 98.2 0.06 14.3 3.2 30904 21.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.81 1.91 92.1 0.34 2.9 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1BK0 1.82 11.96 28870 1181 98.08 0.16211 0.16041 0.1714 0.20181 0.2069 RANDOM 20.05
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.38 1.88 -1.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.186 r_dihedral_angle_3_deg 12.862 r_dihedral_angle_4_deg 7.298 r_dihedral_angle_1_deg 6.456 r_angle_refined_deg 1.818 r_scbond_it 1.662 r_mcangle_it 1.315 r_angle_other_deg 0.924 r_mcbond_it 0.901 r_mcbond_other 0.9
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.186 r_dihedral_angle_3_deg 12.862 r_dihedral_angle_4_deg 7.298 r_dihedral_angle_1_deg 6.456 r_angle_refined_deg 1.818 r_scbond_it 1.662 r_mcangle_it 1.315 r_angle_other_deg 0.924 r_mcbond_it 0.901 r_mcbond_other 0.9 r_chiral_restr 0.243 r_bond_refined_d 0.02 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2640 Nucleic Acid Atoms Solvent Atoms 233 Heterogen Atoms 52
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALA data scaling