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Crystal structure of the T6SS lipoprotein TssJ1 from Pseudomonas aeruginosa
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.2M FORMATE, 15% PEG 5K MME
Crystal Properties Matthews coefficient Solvent content 2 38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.315 α = 90 b = 41.637 β = 90 c = 76.947 γ = 90
Symmetry Space Group P 2 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 IMAGE PLATE RIGAKU RAXIS II MIRRORS 2011-03-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 19.24 98.7 0.096 10.2 9.27 24682 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.45 87 0.46 2.7 5.61
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.4 22.75 23337 1242 98.41 0.1633 0.16127 0.20187 0.2105 RANDOM 16.635
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.67 0.68
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 44.785 r_dihedral_angle_2_deg 34.894 r_sphericity_bonded 15.705 r_dihedral_angle_4_deg 12.898 r_dihedral_angle_3_deg 10.211 r_dihedral_angle_1_deg 7.102 r_rigid_bond_restr 4.698 r_angle_refined_deg 1.978 r_angle_other_deg 0.887 r_chiral_restr 0.131
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 44.785 r_dihedral_angle_2_deg 34.894 r_sphericity_bonded 15.705 r_dihedral_angle_4_deg 12.898 r_dihedral_angle_3_deg 10.211 r_dihedral_angle_1_deg 7.102 r_rigid_bond_restr 4.698 r_angle_refined_deg 1.978 r_angle_other_deg 0.887 r_chiral_restr 0.131 r_bond_refined_d 0.02 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1003 Nucleic Acid Atoms Solvent Atoms 147 Heterogen Atoms 12
Software Software Software Name Purpose d*TREK data reduction SCALEPACK data scaling SHELX phasing PHASER phasing REFMAC refinement