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Crystal structure of AfC3PO
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3ZC0 PDB ENTRY 3ZC0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 9.5 - 10 % PEG 3K, 100 MM KCL, 200 MM MGCL2, 40 MM SODIUM CACODYLATE PH 5.5, 5 MM DTT.
Crystal Properties Matthews coefficient Solvent content 2.6 52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 183.31 α = 90 b = 183.31 β = 90 c = 111.28 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD COMPOUND REFRACTIVE LENSES 2010-10-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.27 70.75 99.9 0.08 17.5 9.2 29895 106.14
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.27 3.35 100 0.75 2.8 9.5
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 3ZC0 3.269 53.56 1.35 29852 3776 99.88 0.2246 0.2205 0.2252 0.2813 0.286 103.54
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -15.74 -15.74 31.4801
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 20.198 f_angle_d 1.279 f_chiral_restr 0.083 f_bond_d 0.01 f_plane_restr 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11807 Nucleic Acid Atoms Solvent Atoms 8 Heterogen Atoms 5
Software Software Software Name Purpose Coot model building xia2 data reduction xia2 data scaling SCALA data scaling SnB phasing autoSHARP phasing PHENIX phasing PHASER phasing PHENIX refinement