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Crystal Structure of pOPH Native
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3WL5 PDB ENTRY 3WL5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 295 0.1M tri-sodium citrate, pH 5.6, 29% w/v Polyethylene Glycol 4000, 3% w/v n-Octyl-beta-D-glucoside, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.24 45.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.934 α = 89.63 b = 58.285 β = 73.17 c = 65.35 γ = 75.76
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2013-05-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE BL13B1 1 NSRRC BL13B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 25 95.6 0.053 22.1 3.2 89981 85743 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 94.3 0.22 5.5 3.2 8502
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 3WL5 1.6 25 89981 83750 4254 0.153 0.153 0.152 0.1518 0.174 0.1742 RANDOM 19.441
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -7.823 5.138 0.106 2.875 -1.381 4.948
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 2.894 c_scbond_it 2.032 c_mcangle_it 1.685 c_angle_deg 1.62 c_mcbond_it 1.134 c_bond_d 0.013
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5002 Nucleic Acid Atoms Solvent Atoms 1049 Heterogen Atoms 13
Software Software Software Name Purpose Blu-Ice data collection PHASER phasing CNS refinement HKL-2000 data reduction HKL-2000 data scaling