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Crystal structure of IIb selective Fc variant, Fc(V12), in complex with FcgRIIb
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 298 19% PEG 3350, 0.1M Bis-Tris, 0.2M potassium phosphate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 4.01 69.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 156.71 α = 90 b = 260.2 β = 90 c = 56.86 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD RAYONIX MX225HE 2012-04-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL32XU 1.00 SPring-8 BL32XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.81 56.85 99.5 0.093 15.6 7.2 28840 28725 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.81 2.88 99.5 0.886 0.886 0.951 0.344 0.9 7.5 2073
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.86 25 27229 1366 99.38 0.2322 0.2303 0.2314 0.2696 0.2696 RANDOM 65.551
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.9 1.8 1.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.058 r_dihedral_angle_3_deg 15.74 r_dihedral_angle_4_deg 14.873 r_dihedral_angle_1_deg 5.279 r_mcangle_it 3.784 r_scbond_it 2.337 r_mcbond_it 2.194 r_angle_refined_deg 1.075 r_chiral_restr 0.064 r_bond_refined_d 0.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.058 r_dihedral_angle_3_deg 15.74 r_dihedral_angle_4_deg 14.873 r_dihedral_angle_1_deg 5.279 r_mcangle_it 3.784 r_scbond_it 2.337 r_mcbond_it 2.194 r_angle_refined_deg 1.075 r_chiral_restr 0.064 r_bond_refined_d 0.005 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4502 Nucleic Acid Atoms Solvent Atoms 42 Heterogen Atoms 224
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction PHASER phasing