☰ Navigation Tabs
Mutant N-terminal domain of Mycobacterium tuberculosis ClpC1, F2Y, bound to Cyclomarin A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3WDC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 291 0.2M ammonium acetate, 20% polyethylene glycol 3350, 0.025M magnesium formate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 1.77 30.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.79 α = 90 b = 58.85 β = 90 c = 64.53 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 PIXEL PSI PILATUS 6M 2011-02-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.0 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.18 45 42684
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3WDC 1.18 30 40467 2154 99.36 0.1268 0.1254 0.1232 0.1542 0.152 RANDOM 12.5909
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.09 -0.08 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.498 r_sphericity_free 32.092 r_dihedral_angle_4_deg 20.271 r_dihedral_angle_3_deg 14.08 r_sphericity_bonded 12.572 r_dihedral_angle_1_deg 4.893 r_rigid_bond_restr 3.998 r_angle_refined_deg 2.057 r_chiral_restr 0.12 r_bond_refined_d 0.015
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.498 r_sphericity_free 32.092 r_dihedral_angle_4_deg 20.271 r_dihedral_angle_3_deg 14.08 r_sphericity_bonded 12.572 r_dihedral_angle_1_deg 4.893 r_rigid_bond_restr 3.998 r_angle_refined_deg 2.057 r_chiral_restr 0.12 r_bond_refined_d 0.015 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1218 Nucleic Acid Atoms Solvent Atoms 168 Heterogen Atoms 4
Software Software Software Name Purpose MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling