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Crystal structure of the cyanobacterial protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 277 20% PEG8000, 0.2M POTASSIUM IODIDE, pH 7.5, VAPOR DIFFUSION, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.25 62.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.133 α = 90 b = 69.133 β = 90 c = 124.11 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-10-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-5A Photon Factory BL-5A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 99.7 0.057 13.5 28763
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 98.9 0.399 13.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 28.31 27175 1448 99.4 0.199 0.197 0.1958 0.224 0.2206 RANDOM 29.47
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.32 0.32 -0.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.622 r_dihedral_angle_4_deg 18.183 r_dihedral_angle_3_deg 14.693 r_dihedral_angle_1_deg 5.567 r_scangle_it 4.314 r_scbond_it 2.6 r_mcangle_it 1.812 r_angle_refined_deg 1.519 r_mcbond_it 1.01 r_symmetry_hbond_refined 0.503
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.622 r_dihedral_angle_4_deg 18.183 r_dihedral_angle_3_deg 14.693 r_dihedral_angle_1_deg 5.567 r_scangle_it 4.314 r_scbond_it 2.6 r_mcangle_it 1.812 r_angle_refined_deg 1.519 r_mcbond_it 1.01 r_symmetry_hbond_refined 0.503 r_nbtor_refined 0.307 r_symmetry_vdw_refined 0.261 r_nbd_refined 0.227 r_xyhbond_nbd_refined 0.203 r_chiral_restr 0.121 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1438 Nucleic Acid Atoms Solvent Atoms 185 Heterogen Atoms 44
Software Software Software Name Purpose SOLVE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling