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Crystal structure of TTC0807 complexed with (S)-2-aminoethyl-L-cysteine (AEC)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1LST
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 0.2M Sodium sulfate, 20% PEG4000, 10mM AEC, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.98 37.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.573 α = 90 b = 68.603 β = 90 c = 98.527 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 210 2010-11-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.0 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30.67 99.9 37509 37509 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1LST 1.9 30.67 35368 35368 1860 99.16 0.19064 0.19064 0.18786 0.1893 0.243 0.2439 RANDOM 19.418
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.799 r_dihedral_angle_4_deg 19.038 r_dihedral_angle_3_deg 17.559 r_dihedral_angle_1_deg 5.738 r_scangle_it 4.194 r_scbond_it 2.503 r_angle_refined_deg 1.386 r_mcangle_it 1.376 r_mcbond_it 0.699 r_chiral_restr 0.105
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.799 r_dihedral_angle_4_deg 19.038 r_dihedral_angle_3_deg 17.559 r_dihedral_angle_1_deg 5.738 r_scangle_it 4.194 r_scbond_it 2.503 r_angle_refined_deg 1.386 r_mcangle_it 1.376 r_mcbond_it 0.699 r_chiral_restr 0.105 r_bond_refined_d 0.013 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3769 Nucleic Acid Atoms Solvent Atoms 267 Heterogen Atoms 25
Software Software Software Name Purpose HKL-2000 data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling