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Crystal structure of beta-glucuronidase from Acidobacterium capsulatum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 2.0M sodium phosphate monobasic monohydrate/potassium phosphate dibasic (0.5/9.5 [v/v]), VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.66 53.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.126 α = 90 b = 101.126 β = 90 c = 217.881 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 270 2010-01-29 M SINGLE WAVELENGTH 2 1 x-ray 95 CCD ADSC QUANTUM 270 2010-01-29 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NE3A 1.0000 Photon Factory AR-NE3A 2 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NE3A 0.97946, 0.97967, 0.96000 Photon Factory AR-NE3A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.5 30.684 100 0.062 47 14.6 90146 14.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.5 1.53 100 0.392 6.8 14.4 4427
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.5 30.58 85363 4504 99.71 0.17264 0.17173 0.18987 0.1891 RANDOM 15.946
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 0.05 -0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.544 r_dihedral_angle_4_deg 16.807 r_dihedral_angle_3_deg 12.771 r_dihedral_angle_1_deg 5.576 r_scangle_it 2.295 r_scbond_it 1.411 r_angle_refined_deg 1.066 r_mcangle_it 0.905 r_mcbond_it 0.481 r_chiral_restr 0.073
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.544 r_dihedral_angle_4_deg 16.807 r_dihedral_angle_3_deg 12.771 r_dihedral_angle_1_deg 5.576 r_scangle_it 2.295 r_scbond_it 1.411 r_angle_refined_deg 1.066 r_mcangle_it 0.905 r_mcbond_it 0.481 r_chiral_restr 0.073 r_bond_refined_d 0.007 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3531 Nucleic Acid Atoms Solvent Atoms 503 Heterogen Atoms 17
Software Software Software Name Purpose ADSC data collection SOLVE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling