3V7F

Crystal Structure of Streptococcus pyogenes Csn2


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP72932.8M sodium acetate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
3.4564.32

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 59.06α = 90
b = 162.92β = 90
c = 149.04γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102010-12-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPAL/PLS BEAMLINE 6C11.0000PAL/PLS6C1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.949.6898.41606116061
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.93.0697.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.949.68152321523281397.910.218140.218140.21560.26659RANDOM65.144
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
5.18-4.19-0.99
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.895
r_dihedral_angle_3_deg19.693
r_dihedral_angle_4_deg12.006
r_dihedral_angle_1_deg6.575
r_scangle_it3.854
r_scbond_it2.149
r_angle_refined_deg1.713
r_mcangle_it1.596
r_mcbond_it0.813
r_chiral_restr0.099
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.895
r_dihedral_angle_3_deg19.693
r_dihedral_angle_4_deg12.006
r_dihedral_angle_1_deg6.575
r_scangle_it3.854
r_scbond_it2.149
r_angle_refined_deg1.713
r_mcangle_it1.596
r_mcbond_it0.813
r_chiral_restr0.099
r_bond_refined_d0.017
r_gen_planes_refined0.007
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3570
Nucleic Acid Atoms
Solvent Atoms28
Heterogen Atoms3

Software

Software
Software NamePurpose
ADSCdata collection
PHASERphasing
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling