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Crystal structure of renal tumor suppressor protein, folliculin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other SEMET STRUCTURE OF FOLLICULIN COLLECTED AT 2.9A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 100 MM BIS-TRIS, PH5.5, 200 MM LISO4, 25% PEG 3350, VAPOR DIFFUSION, TEMPERATURE 293K, VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.27 45.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.05 α = 90 b = 99.951 β = 90 c = 107.584 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2009-10-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.92 29.85 97.6 0.073 0.073 14.3 6.1 35477
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.92 1.97 61.2 0.648 0.648 2.1 4.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT SEMET STRUCTURE OF FOLLICULIN COLLECTED AT 2.9A 2 29.14 29744 1570 99 0.207 0.204 0.2149 0.268 0.2752 RANDOM 28.71
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.06 -0.01 -0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.033 r_dihedral_angle_4_deg 20.041 r_dihedral_angle_3_deg 17.374 r_dihedral_angle_1_deg 6.615 r_scangle_it 5.401 r_scbond_it 3.467 r_mcangle_it 2.145 r_angle_refined_deg 1.925 r_mcbond_it 1.254 r_chiral_restr 0.134
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.033 r_dihedral_angle_4_deg 20.041 r_dihedral_angle_3_deg 17.374 r_dihedral_angle_1_deg 6.615 r_scangle_it 5.401 r_scbond_it 3.467 r_mcangle_it 2.145 r_angle_refined_deg 1.925 r_mcbond_it 1.254 r_chiral_restr 0.134 r_bond_refined_d 0.024 r_gen_planes_refined 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3078 Nucleic Acid Atoms Solvent Atoms 224 Heterogen Atoms
Software Software Software Name Purpose DNA data collection PHENIX model building REFMAC refinement XDS data reduction SCALA data scaling PHENIX phasing