X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.627715% PEG4000, 0.1M Sodium Acetate pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.2444.99

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 102.993α = 90
b = 109.606β = 90
c = 132.277γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152011-02-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-10.9791ESRFID23-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.5492097.20.1140.1144.7211226211226
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.5491.6198421098

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1MWV1.549201994501994501052696.930.198210.198210.19710.21959RANDOM12.4
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.03-0.10.07
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.444
r_dihedral_angle_4_deg15.222
r_dihedral_angle_3_deg12.058
r_dihedral_angle_1_deg5.285
r_scangle_it2.195
r_scbond_it1.422
r_angle_refined_deg1.171
r_angle_other_deg0.868
r_mcangle_it0.846
r_mcbond_it0.474
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.444
r_dihedral_angle_4_deg15.222
r_dihedral_angle_3_deg12.058
r_dihedral_angle_1_deg5.285
r_scangle_it2.195
r_scbond_it1.422
r_angle_refined_deg1.171
r_angle_other_deg0.868
r_mcangle_it0.846
r_mcbond_it0.474
r_mcbond_other0.119
r_chiral_restr0.071
r_bond_refined_d0.008
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms11285
Nucleic Acid Atoms
Solvent Atoms1615
Heterogen Atoms86

Software

Software
Software NamePurpose
DNAdata collection
MOLREPphasing
REFMACrefinement
DENZOdata reduction
SCALAdata scaling