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Structure of BmNPV ORF075 (p33)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 PEG 3350, Proline, 1,6-hexanediol, HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.2 44.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.52 α = 90 b = 80.563 β = 90 c = 130.853 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2011-05-17 M SINGLE WAVELENGTH 2 1 x-ray 100 IMAGE PLATE RIGAKU 2011-07-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.9794 SSRF BL17U 2 SEALED TUBE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.1 65.37 98.59 0.057 5.7 16315 16085 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.1 2.14 97.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.1 65.37 16315 16085 859 98.59 0.18586 0.18288 0.1834 0.24079 0.2414 RANDOM 24.849
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.46 1.25 0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.978 r_dihedral_angle_4_deg 18.032 r_dihedral_angle_3_deg 14.435 r_dihedral_angle_1_deg 5.217 r_scangle_it 3.288 r_scbond_it 2.317 r_angle_refined_deg 1.371 r_mcangle_it 1.331 r_mcbond_it 1.071 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.978 r_dihedral_angle_4_deg 18.032 r_dihedral_angle_3_deg 14.435 r_dihedral_angle_1_deg 5.217 r_scangle_it 3.288 r_scbond_it 2.317 r_angle_refined_deg 1.371 r_mcangle_it 1.331 r_mcbond_it 1.071 r_nbtor_refined 0.305 r_nbd_refined 0.211 r_symmetry_vdw_refined 0.191 r_xyhbond_nbd_refined 0.161 r_symmetry_hbond_refined 0.129 r_chiral_restr 0.093 r_bond_refined_d 0.014 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2087 Nucleic Acid Atoms Solvent Atoms 148 Heterogen Atoms 53
Software Software Software Name Purpose HKL-2000 data collection SHARP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling