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Crystal Structure of BACE with Compound 11
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 298 protein in sodium borate, pH 8.5, reservoir: 30% PEG200, 0.1 M sodium acetate, pH 5.2-5.4, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.14 42.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.69 α = 90 b = 103.964 β = 90 c = 99.406 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944+ 2008-12-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.99 21.364 26379 25828
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION RIGID BODY REFINEMENT THROUGHOUT 2 21.36 24480 1348 97.93 0.22954 0.22533 0.2293 0.3079 0.3098 RANDOM 18.66
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.09 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.804 r_dihedral_angle_4_deg 19.285 r_dihedral_angle_3_deg 15.459 r_dihedral_angle_1_deg 8.321 r_scangle_it 4.599 r_scbond_it 3.014 r_mcangle_it 1.884 r_mcbond_it 1.138 r_angle_refined_deg 1.02 r_angle_other_deg 0.641
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.804 r_dihedral_angle_4_deg 19.285 r_dihedral_angle_3_deg 15.459 r_dihedral_angle_1_deg 8.321 r_scangle_it 4.599 r_scbond_it 3.014 r_mcangle_it 1.884 r_mcbond_it 1.138 r_angle_refined_deg 1.02 r_angle_other_deg 0.641 r_mcbond_other 0.336 r_chiral_restr 0.072 r_gen_planes_refined 0.011 r_bond_refined_d 0.009 r_gen_planes_other 0.001 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3102 Nucleic Acid Atoms Solvent Atoms 339 Heterogen Atoms 51
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction autoBUSTER phasing