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Crystal Structure of Yeast Irc6p - A Novel Type of Conserved Clathrin Accessory Protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 0.2 M ammonium sulfate, 0.1 MES, 30 % w/v PEG monomethyl ether 5000, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.9 35.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.638 α = 90 b = 61.638 β = 90 c = 95.144 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2009-08-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.9793 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 80 97.4 0.066 13.1 6.9 18511 -3 14.74
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 96.5 0.541 3.96 7.8 1817
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 27.27 18510 963 97.59 0.1977 0.1966 0.2084 0.2181 0.2371 RANDOM 25.72
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.12 0.06 0.12 -0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.663 r_dihedral_angle_4_deg 16.329 r_dihedral_angle_3_deg 11.411 r_dihedral_angle_1_deg 5.713 r_scangle_it 5.177 r_scbond_it 3.253 r_mcangle_it 2.065 r_mcbond_it 1.122 r_angle_refined_deg 1.104 r_angle_other_deg 0.817
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.663 r_dihedral_angle_4_deg 16.329 r_dihedral_angle_3_deg 11.411 r_dihedral_angle_1_deg 5.713 r_scangle_it 5.177 r_scbond_it 3.253 r_mcangle_it 2.065 r_mcbond_it 1.122 r_angle_refined_deg 1.104 r_angle_other_deg 0.817 r_mcbond_other 0.341 r_chiral_restr 0.069 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1498 Nucleic Acid Atoms Solvent Atoms 40 Heterogen Atoms
Software Software Software Name Purpose SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction ADSC data collection DENZO data reduction SHELXD phasing SHELXE model building