Experiment: 3UC7

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	2.5	298	0.2 M Tris-HCl, 0.2 M magnesium chloride, 2.0 M sodium chloride, pH 2.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K

Crystal Properties
Matthews coefficient	Solvent content
1.72	28.42

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 57.697	α = 90
b = 48.748	β = 116.91
c = 35.259	γ = 90

Symmetry
Space Group	C 1 2 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	MARMOSAIC 325 mm CCD		2009-01-03	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SSRL BEAMLINE BL11-1	0.82	SSRL	BL11-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	0.99	50	81.3	0.089	9.3	11.4	39329	39329

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	0.99	1.03	31.1			3.7	1498

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	PDB ENTRY 2LL5	1.1	35.39	33543	33543	1695	94.81	0.1514	0.1491	0.1937	RANDOM	18.274

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
1.91		0.13	-0.58		-1.22

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	22.408
r_sphericity_free	18.643
r_dihedral_angle_4_deg	18.126
r_dihedral_angle_3_deg	13.696
r_sphericity_bonded	9.739
r_scangle_it	7.797
r_scbond_it	6.73
r_mcangle_it	6.09
r_dihedral_angle_1_deg	4.775
r_mcbond_it	4.652

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	22.408
r_sphericity_free	18.643
r_dihedral_angle_4_deg	18.126
r_dihedral_angle_3_deg	13.696
r_sphericity_bonded	9.739
r_scangle_it	7.797
r_scbond_it	6.73
r_mcangle_it	6.09
r_dihedral_angle_1_deg	4.775
r_mcbond_it	4.652
r_mcbond_other	3.183
r_angle_refined_deg	2.402
r_rigid_bond_restr	2.109
r_angle_other_deg	1.186
r_bond_refined_d	0.029
r_gen_planes_refined	0.013
r_bond_other_d	0.003
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	906
Nucleic Acid Atoms
Solvent Atoms	107
Heterogen Atoms	2

Software

Software
Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
Blu-Ice	data collection

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.