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Crystal structure of the cytochrome P4503A4-bromoergocryptine complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1TGN PDB ENTRY 1TGN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH UNDER OIL 6.4 293 2% tacsimate, 6% PEG3350, pH 6.4, MICROBATCH UNDER OIL, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.2 43.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.67 α = 90 b = 99.39 β = 90 c = 131.87 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 103 CCD ADSC QUANTUM 315r mirrors 2010-11-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 1.0 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 39.898 97.2 0.059 12.1 5.3 28144 27255 36.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.27 92.2 0.532 2.1 4.2 3721
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1TGN 2.15 39.898 27255 1383 96.83 0.2236 0.2207 0.2251 0.2779 0.2871 RANDOM 52.594
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.04 -2 -0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.606 r_dihedral_angle_3_deg 17.235 r_dihedral_angle_4_deg 16.613 r_dihedral_angle_1_deg 6.142 r_scangle_it 3.049 r_scbond_it 1.955 r_angle_refined_deg 1.584 r_mcangle_it 1.312 r_mcbond_it 0.717 r_chiral_restr 0.105
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.606 r_dihedral_angle_3_deg 17.235 r_dihedral_angle_4_deg 16.613 r_dihedral_angle_1_deg 6.142 r_scangle_it 3.049 r_scbond_it 1.955 r_angle_refined_deg 1.584 r_mcangle_it 1.312 r_mcbond_it 0.717 r_chiral_restr 0.105 r_bond_refined_d 0.014 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3672 Nucleic Acid Atoms Solvent Atoms 65 Heterogen Atoms 86
Software Software Software Name Purpose Blu-Ice data collection PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling