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Crystal Structure of Murine Siderocalin in Complex with an Fab Fragment
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.2 298 20% PEG 8000, 0.1M sodium citrate, 0.2M sodium chloride, pH 4.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.77 55.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.133 α = 90 b = 124.091 β = 90 c = 147.487 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-04-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 1.0 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 50 93.1 0.071 13.2 4.6 35241
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9 95.8 0.361 4.4 3572
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.8 49.51 35239 1759 93.06 0.2229 0.2193 0.2223 0.2917 0.292 RANDOM 46.9157
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.15 -0.24 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.769 r_dihedral_angle_3_deg 16.195 r_dihedral_angle_4_deg 15.579 r_dihedral_angle_1_deg 6.639 r_scangle_it 2.503 r_scbond_it 1.596 r_angle_refined_deg 1.284 r_mcangle_it 1.126 r_angle_other_deg 0.854 r_mcbond_it 0.597
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.769 r_dihedral_angle_3_deg 16.195 r_dihedral_angle_4_deg 15.579 r_dihedral_angle_1_deg 6.639 r_scangle_it 2.503 r_scbond_it 1.596 r_angle_refined_deg 1.284 r_mcangle_it 1.126 r_angle_other_deg 0.854 r_mcbond_it 0.597 r_mcbond_other 0.098 r_chiral_restr 0.073 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8278 Nucleic Acid Atoms Solvent Atoms 61 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction ADSC data collection HKL-2000 data reduction PHASER phasing