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Crystal Structure of YopHQ357F(Catalytic Domain, Residues 163-468) in complex with pNCS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 291 20% PEG 10000, 0.1M Hepes, pH 7.5, vapor diffusion, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.35 47.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.863 α = 104.78 b = 53.993 β = 108.79 c = 65.759 γ = 97.83
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-08-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.075 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 59 96.3 0.054 18.5 56246 54165
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 20 54165 2745 95.89 0.1806 0.1792 0.1744 0.2071 0.1975 RANDOM 22.9191
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.4 -0.95 -1.52 0.1 -0.56 -1.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.601 r_dihedral_angle_4_deg 18.183 r_dihedral_angle_3_deg 12.765 r_dihedral_angle_1_deg 5.841 r_scangle_it 4.46 r_scbond_it 2.697 r_mcangle_it 1.573 r_angle_refined_deg 1.387 r_mcbond_it 0.822 r_chiral_restr 0.099
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.601 r_dihedral_angle_4_deg 18.183 r_dihedral_angle_3_deg 12.765 r_dihedral_angle_1_deg 5.841 r_scangle_it 4.46 r_scbond_it 2.697 r_mcangle_it 1.573 r_angle_refined_deg 1.387 r_mcbond_it 0.822 r_chiral_restr 0.099 r_bond_refined_d 0.013 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4336 Nucleic Acid Atoms Solvent Atoms 309 Heterogen Atoms 40
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction