☰ Navigation Tabs
Structure of the SpoIIQ-SpoIIIAH pore forming complex.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 293 0.1 M sodium acetate,50% PEG 400, 0.5 mM spermidine, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.12 60.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.797 α = 90 b = 111.088 β = 90 c = 136.093 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-10-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9763 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.26 50 83 0.083 25.7 6.6 23724 23724 53
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.26 2.3 32.1 0.41 2.1 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.26 46.72 22507 22507 1217 100 0.16858 0.16858 0.16523 0.22581 0.217 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.96 -1.31 3.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.852 r_sphericity_bonded 27.051 r_dihedral_angle_4_deg 24.692 r_dihedral_angle_3_deg 21.564 r_sphericity_free 20.424 r_dihedral_angle_1_deg 6.543 r_rigid_bond_restr 5.065 r_angle_refined_deg 2.095 r_chiral_restr 0.122 r_bond_refined_d 0.024
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.852 r_sphericity_bonded 27.051 r_dihedral_angle_4_deg 24.692 r_dihedral_angle_3_deg 21.564 r_sphericity_free 20.424 r_dihedral_angle_1_deg 6.543 r_rigid_bond_restr 5.065 r_angle_refined_deg 2.095 r_chiral_restr 0.122 r_bond_refined_d 0.024 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_scbond_it r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2096 Nucleic Acid Atoms Solvent Atoms 104 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection SHELXS phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling