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Crystal structure of GkaP mutant Y99L from Geobacillus kaustophilus HTA426
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 287 14% PEG 20000, 0.1M MES pH6.5, vapor diffusion, hanging drop, temperature 287K
Crystal Properties Matthews coefficient Solvent content 2.35 47.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.357 α = 90 b = 80.295 β = 99.35 c = 92.204 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-12-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 1.000 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 50 74050
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.75 50 70261 3732 0.22192 0.2215 0.24928 0.2502 RANDOM 27.3618
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.81 0.13 -0.03 -0.74
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.949 r_dihedral_angle_3_deg 12.977 r_dihedral_angle_4_deg 11.967 r_dihedral_angle_1_deg 4.602 r_angle_refined_deg 0.88 r_scangle_it 0.682 r_scbond_it 0.385 r_mcangle_it 0.36 r_mcbond_it 0.193 r_chiral_restr 0.057
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.949 r_dihedral_angle_3_deg 12.977 r_dihedral_angle_4_deg 11.967 r_dihedral_angle_1_deg 4.602 r_angle_refined_deg 0.88 r_scangle_it 0.682 r_scbond_it 0.385 r_mcangle_it 0.36 r_mcbond_it 0.193 r_chiral_restr 0.057 r_bond_refined_d 0.006 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5088 Nucleic Acid Atoms Solvent Atoms 500 Heterogen Atoms 9
Software Software Software Name Purpose SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction