☰ Navigation Tabs
Crystal structure of Adenovirus serotype 5 hexon at 1.6A resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1P30
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 291 14% PEG 6000 in Bis-tris propane buffer., pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.51 51.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 149.15 α = 90 b = 149.15 β = 90 c = 126.69 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 4 2010-10-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.9763 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.57 45.55 99.8 0.062 3.9 138241 2 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1P30 1.57 45.55 135493 7132 96.9 0.18578 0.18384 0.1851 0.22272 0.2226 RANDOM 26.073
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.61 -0.31 -0.61 0.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.204 r_dihedral_angle_4_deg 17.118 r_dihedral_angle_3_deg 13.693 r_dihedral_angle_1_deg 7.214 r_scangle_it 4.767 r_scbond_it 3.302 r_angle_refined_deg 2.306 r_mcangle_it 2.297 r_mcbond_it 1.502 r_chiral_restr 0.166
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.204 r_dihedral_angle_4_deg 17.118 r_dihedral_angle_3_deg 13.693 r_dihedral_angle_1_deg 7.214 r_scangle_it 4.767 r_scbond_it 3.302 r_angle_refined_deg 2.306 r_mcangle_it 2.297 r_mcbond_it 1.502 r_chiral_restr 0.166 r_bond_refined_d 0.028 r_gen_planes_refined 0.014 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7107 Nucleic Acid Atoms Solvent Atoms 800 Heterogen Atoms
Software Software Software Name Purpose PHASER phasing REFMAC refinement d*TREK data reduction d*TREK data scaling