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Crystal Structure of Influenza A Virus nucleoprotein with Ligand
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5.25 293 10 mM NaAc pH 4.5, 0.1 M NaCl, 0.1 M NaCitrate pH 5.25, 0.5 M LiCl, 16% PEG 4000, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.32 46.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 146.692 α = 90 b = 146.692 β = 90 c = 146.692 γ = 90
Symmetry Space Group P 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.000 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.82 48.85 99.7 21313 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.95 3.18 99.8 7.2 11.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3 44.24 20480 833 99.99 0.23528 0.23282 0.29633 0.2506 RANDOM 58.284
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.795 r_dihedral_angle_4_deg 15.889 r_dihedral_angle_3_deg 15.671 r_dihedral_angle_1_deg 4.644 r_angle_refined_deg 0.904 r_scangle_it 0.86 r_mcangle_it 0.693 r_scbond_it 0.502 r_mcbond_it 0.385 r_nbtor_refined 0.293
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.795 r_dihedral_angle_4_deg 15.889 r_dihedral_angle_3_deg 15.671 r_dihedral_angle_1_deg 4.644 r_angle_refined_deg 0.904 r_scangle_it 0.86 r_mcangle_it 0.693 r_scbond_it 0.502 r_mcbond_it 0.385 r_nbtor_refined 0.293 r_nbd_refined 0.182 r_symmetry_vdw_refined 0.151 r_xyhbond_nbd_refined 0.121 r_symmetry_hbond_refined 0.102 r_chiral_restr 0.06 r_bond_refined_d 0.006 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6233 Nucleic Acid Atoms Solvent Atoms 7 Heterogen Atoms 62
Software Software Software Name Purpose MOLREP phasing REFMAC refinement XDS data reduction XDS data scaling