Experiment: 3T5D

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	9.5	293	0.2M sodium chlorid, 1.1M ammonium sulfate, 0.1M CHES, pH 9.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K

Crystal Properties
Matthews coefficient	Solvent content
3.29	62.6

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 82.363	α = 90
b = 82.363	β = 90
c = 210.598	γ = 120

Symmetry
Space Group	P 61

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2009-08-14	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X10SA	0.99986	SLS	X10SA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	3.3	71.25	99.1		8.9	12190	12079

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	R-Sym I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	3.3	3.4	98.9		0.392	0.596	3.85	9.1	1007

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	3.3	71.25	12079	11498	581	99.28	0.28696	0.28536	0.31826	RANDOM	68.02

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-6.8	-3.4		-6.8		10.21

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	31.969
r_dihedral_angle_3_deg	14.222
r_dihedral_angle_4_deg	14.082
r_dihedral_angle_1_deg	4.042
r_angle_refined_deg	0.912
r_mcangle_it	0.682
r_mcbond_it	0.379
r_nbtor_refined	0.294
r_nbd_refined	0.165
r_scangle_it	0.129

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	31.969
r_dihedral_angle_3_deg	14.222
r_dihedral_angle_4_deg	14.082
r_dihedral_angle_1_deg	4.042
r_angle_refined_deg	0.912
r_mcangle_it	0.682
r_mcbond_it	0.379
r_nbtor_refined	0.294
r_nbd_refined	0.165
r_scangle_it	0.129
r_symmetry_vdw_refined	0.109
r_xyhbond_nbd_refined	0.096
r_symmetry_hbond_refined	0.09
r_scbond_it	0.079
r_chiral_restr	0.056
r_bond_refined_d	0.006
r_gen_planes_refined	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	3783
Nucleic Acid Atoms
Solvent Atoms	2
Heterogen Atoms	56

Software

Software
Software Name	Purpose
PRO	data collection
MOLREP	phasing
REFMAC	refinement
XDS	data reduction
XSCALE	data scaling

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.