3T3L

1.15 A structure of human frataxin variant Q153A


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.62952.0 M ammonium sulfate, 0.1 M sodium citrate tribasic dihydrate, 0.2 M potassium sodium tartrate tetrahydrate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
2.2745.71

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 87.44α = 90
b = 32.46β = 91.87
c = 45.17γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayCCDADSC QUANTUM 315rMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL7-10.9794SSRLBL7-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.1545.1599.445196
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.151.17899.22

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.1545.1545196228099.40.166940.166940.166250.17935RANDOM11.23
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.09-0.380.26-0.19
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.315
r_dihedral_angle_4_deg14.772
r_dihedral_angle_3_deg13.433
r_dihedral_angle_1_deg6.418
r_scangle_it4.789
r_scbond_it3.061
r_angle_refined_deg2.424
r_mcangle_it2.33
r_mcbond_it1.547
r_chiral_restr0.165
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.315
r_dihedral_angle_4_deg14.772
r_dihedral_angle_3_deg13.433
r_dihedral_angle_1_deg6.418
r_scangle_it4.789
r_scbond_it3.061
r_angle_refined_deg2.424
r_mcangle_it2.33
r_mcbond_it1.547
r_chiral_restr0.165
r_bond_refined_d0.03
r_gen_planes_refined0.015
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms949
Nucleic Acid Atoms
Solvent Atoms94
Heterogen Atoms5

Software

Software
Software NamePurpose
Blu-Icedata collection
XFITdata reduction
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling