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Crystal structure of human Galectin-3 in complex with methyl 2-O-acetyl-3-O-toluoyl-beta-D-talopyranoside
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 31% PEG 6000, 100mM MGCl2, 8mM beta merceptoethanol, 100mM Tris HCL, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.12 41.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.788 α = 90 b = 58.125 β = 90 c = 63.541 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 CCD BRUKER SMART 6000 2009-08-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE MACSCIENCE 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 42.89 94.23 17607 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.642 75
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.6 42.89 2 16625 893 94.23 0.16 0.155 0.1532 0.1547 0.18878 0.1827 RANDOM 19.516
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.54 -0.37 -0.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.011 r_dihedral_angle_3_deg 10.578 r_dihedral_angle_4_deg 10.257 r_dihedral_angle_1_deg 6.391 r_scangle_it 4.585 r_mcangle_it 3.814 r_scbond_it 2.979 r_mcbond_it 2.42 r_angle_refined_deg 1.273 r_mcbond_other 0.757
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.011 r_dihedral_angle_3_deg 10.578 r_dihedral_angle_4_deg 10.257 r_dihedral_angle_1_deg 6.391 r_scangle_it 4.585 r_mcangle_it 3.814 r_scbond_it 2.979 r_mcbond_it 2.42 r_angle_refined_deg 1.273 r_mcbond_other 0.757 r_angle_other_deg 0.736 r_chiral_restr 0.077 r_bond_refined_d 0.007 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1108 Nucleic Acid Atoms Solvent Atoms 123 Heterogen Atoms 26
Software Software Software Name Purpose PROTEUM PLUS data collection REFMAC refinement SAINT data reduction SCALA data scaling