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Crystal structure of NS3/4A protease variant A156T in complex with MK-5172
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop, vapor diffusion 6.2 295 20-25% PEG 3350, 0.1M MES (pH 6.5), 4% ammonium sulfate, hanging drop, vapor diffusion, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.26 45.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.883 α = 90 b = 58.248 β = 90 c = 62.026 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 2011-04-04 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.97872 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 90.1 0.033 19 3.7 16890
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 91.6 0.369 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 23.68 15964 859 89.94 0.19391 0.19181 0.2014 0.234 0.2368 RANDOM 35.932
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.25 -2.71 2.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.295 r_dihedral_angle_4_deg 15.51 r_dihedral_angle_3_deg 12.728 r_dihedral_angle_1_deg 6.626 r_scangle_it 2.644 r_scbond_it 1.657 r_angle_refined_deg 1.459 r_angle_other_deg 1.354 r_mcangle_it 1.197 r_mcbond_it 0.701
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.295 r_dihedral_angle_4_deg 15.51 r_dihedral_angle_3_deg 12.728 r_dihedral_angle_1_deg 6.626 r_scangle_it 2.644 r_scbond_it 1.657 r_angle_refined_deg 1.459 r_angle_other_deg 1.354 r_mcangle_it 1.197 r_mcbond_it 0.701 r_mcbond_other 0.171 r_chiral_restr 0.08 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d 0.005 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1444 Nucleic Acid Atoms Solvent Atoms 97 Heterogen Atoms 60
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction