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Crystal structure of a lectin from Canavalia maritima seeds complexed with Indole-3-Acetic Acid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 Buffer Tris 0.1 M pH 8.5, PEG 4000 30%, lithium sulphate 0.2M, VAPOR DIFFUSION, HANGING DROP, temperature 293K, temperature 293.0K
Crystal Properties Matthews coefficient Solvent content 2.28 46.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.19 α = 90 b = 70.74 β = 90 c = 97.75 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 130 mm 2009-05-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE D03B-MX1 1.433 LNLS D03B-MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 24.36 96.4843 12629 11903 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.15 24.36 12629 11903 584 96.48 0.20714 0.20627 0.2092 0.22539 0.2274 RANDOM 28.088
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.07 -0.34 -0.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.841 r_dihedral_angle_4_deg 20.852 r_dihedral_angle_3_deg 18.908 r_dihedral_angle_1_deg 9.912 r_sphericity_free 9.084 r_scangle_it 5.487 r_sphericity_bonded 4.431 r_scbond_it 4.028 r_mcangle_it 2.658 r_angle_refined_deg 2.654
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.841 r_dihedral_angle_4_deg 20.852 r_dihedral_angle_3_deg 18.908 r_dihedral_angle_1_deg 9.912 r_sphericity_free 9.084 r_scangle_it 5.487 r_sphericity_bonded 4.431 r_scbond_it 4.028 r_mcangle_it 2.658 r_angle_refined_deg 2.654 r_rigid_bond_restr 2.654 r_mcbond_it 1.716 r_chiral_restr 0.172 r_bond_refined_d 0.026 r_gen_planes_refined 0.012
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1755 Nucleic Acid Atoms Solvent Atoms 60 Heterogen Atoms 24
Software Software Software Name Purpose iMOSFLM data reduction Coot model building REFMAC refinement SCALA data scaling